PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA1261
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 313aa    MW: 34040 Da    PI: 9.7541
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA1261genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00036108130123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++C+ C++ F+++  L  H++ H
  Tp57577_TGAC_v2_mRNA1261 108 FSCSFCKRQFPTSQALGGHQNAH 130
                               89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.51E-6105136No hitNo description
PROSITE profilePS5015711.323108135IPR007087Zinc finger, C2H2
PfamPF139122.2E-5108132IPR007087Zinc finger, C2H2
PROSITE patternPS000280110130IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
LLTLICIMAS KSSSISATSQ DQGDSSNSKK VAIMKEIGQD QPSNSNSNKP IDAVKLSKED  60
SVAGSKVQER DFIGGPIQVG SSSGFPSNNN GEKHKNNGKK DNSNSRSFSC SFCKRQFPTS  120
QALGGHQNAH KAERTLEKQR KQRYNSGALG LGQPHFNPYY SYPSTYFTSP YYRALGTRME  180
SLIQKPSYFK PRIDPPYRLG YGHGAICLQE TLNSSLVSLR NMRGGNSGVG NLDIDGTSTL  240
RIEDGTNNKI GAILKFEDSF TNIATTSNLD IGKKIVVAPT PIKDDIHRSK SNIEEEISNS  300
DKSFGLDLSL KL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013458912.11e-132zinc finger-like protein, putative
TrEMBLA0A072UT201e-132A0A072UT20_MEDTR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18223074
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.12e-07C2H2 family protein